Survival-associated eQTLs across different cancer types
We identified 22,212 eQTLs associated with patient overall survival across different cancer types at FDR < 0.05.
|
Cancer type
|
SNP ID
|
SNP position (hg19)
|
Alleles (A/a)
|
log-rank test p-value
|
Sample size
|
Median survival time AA
|
Median survival time Aa
|
Median survival time aa
|
|
|---|---|---|---|---|---|---|---|---|---|
| LGG | rs171690 | chr5:155993387 | A/T | 5.09E-6 | 407 | 15.27 | 15.23 | 15.37 | KM Plot |
| LGG | rs17262187 | chr21:45446514 | G/C | 0 | 401 | 15.7 | 12.17 | 1.23 | KM Plot |
| LGG | rs1728257 | chr9:23860330 | C/G | 0.000193 | 407 | 0 | 10.73 | 16.27 | KM Plot |
| LGG | rs17330597 | chr2:60589020 | C/T | 8.64E-5 | 407 | 8.03 | 16.68 | 15.35 | KM Plot |
| LGG | rs17352915 | chr4:84434011 | C/T | 1.22E-15 | 396 | 14.92 | 18.07 | 5.17 | KM Plot |
| LGG | rs17366913 | chr13:24831182 | C/G | 5.7E-5 | 400 | 15.2 | 17.2 | 8.07 | KM Plot |
| LGG | rs17400140 | chr3:100919575 | T/C | 4.84E-5 | 405 | 15.73 | 14.8 | 12.77 | KM Plot |
| LGG | rs17400307 | chr3:100924203 | A/G | 2.29E-7 | 405 | 15.7 | 14.98 | 10.07 | KM Plot |
| LGG | rs17400342 | chr3:100925944 | A/G | 5.24E-5 | 402 | 15.72 | 14.93 | 12.77 | KM Plot |
| LGG | rs17462693 | chr4:47632461 | C/T | 2.87E-6 | 405 | 14.57 | 16.47 | 13.87 | KM Plot |
| LGG | rs17463918 | chr13:24824973 | A/G | 5.0E-5 | 407 | 15.2 | 16.47 | 8.07 | KM Plot |
| LGG | rs17467700 | chr2:201745667 | A/G | 1.76E-6 | 407 | 15.17 | 16.23 | 4.45 | KM Plot |
| LGG | rs17467707 | chr2:201747681 | C/T | 1.79E-6 | 405 | 15.17 | 17.2 | 4.45 | KM Plot |
| LGG | rs17535141 | chr6:33801471 | C/T | 9.68E-5 | 407 | 11.42 | 17.23 | 15.2 | KM Plot |
| LGG | rs17550379 | chr2:217182568 | A/C | 3.66E-7 | 401 | 15.67 | 15.15 | 8 | KM Plot |